STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_00028Uncharacterized protein. (1138 aa)    
Predicted Functional Partners:
TCAL_04879
TrmE-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
   
 
 0.823
TCAL_06937
Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.821
TCAL_04416
Uncharacterized protein.
   
 
 0.810
TCAL_09032
TRUD domain-containing protein.
   
   0.806
TCAL_12399
Uncharacterized protein.
   
 
 0.805
TCAL_05556
Uncharacterized protein.
   
   0.791
TCAL_11766
Uncharacterized protein.
  
 
 0.789
TCAL_01012
Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.789
TCAL_04131
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
 
 0.769
TCAL_13512
L51_S25_CI-B8 domain-containing protein.
    
   0.761
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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