STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_00145Uncharacterized protein. (835 aa)    
Predicted Functional Partners:
TCAL_00788
CPSF_A domain-containing protein.
    
 0.967
TCAL_03028
WD_REPEATS_REGION domain-containing protein.
    
 0.826
TCAL_09721
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.793
TCAL_17365
DDA1 domain-containing protein.
    
 0.710
TCAL_11073
Uncharacterized protein.
    
 0.642
TCAL_00820
RING-type domain-containing protein.
    
 0.634
TCAL_10045
Uncharacterized protein.
    
 
0.602
TCAL_03086
Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity.
     
 0.582
TCAL_03374
TIP120 domain-containing protein.
   
 
 0.578
TCAL_00789
Uncharacterized protein.
    
 0.575
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.