TCAL_10408 protein (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TCAL_10408

SGNH_hydro domain-containing protein. (238 aa)

Predicted Functional Partners:

TCAL_10557

0.994

TCAL_13566

0.902

TCAL_07262

0.861

TCAL_16130

0.860

TCAL_13122

0.860

TCAL_13123

0.860

TCAL_15090

0.796

TCAL_06445

0.760

TCAL_00227

0.760

TCAL_00934

0.760

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00227	TCAL_10408	A0A553P1G2	A0A553PJF4	PlsC domain-containing protein.	SGNH_hydro domain-containing protein.	0.760
TCAL_00227	TCAL_13122	A0A553P1G2	A0A553PJQ0	PlsC domain-containing protein.	Uncharacterized protein.	0.443
TCAL_00227	TCAL_13123	A0A553P1G2	A0A553PJQ5	PlsC domain-containing protein.	Uncharacterized protein.	0.443
TCAL_00227	TCAL_13566	A0A553P1G2	A0A553PES7	PlsC domain-containing protein.	Phospholipase A2.	0.909
TCAL_00227	TCAL_15090	A0A553P1G2	A0A553NVU5	PlsC domain-containing protein.	Phospholipase A(2).	0.586
TCAL_00227	TCAL_16130	A0A553P1G2	A0A553P3F3	PlsC domain-containing protein.	Uncharacterized protein.	0.443
TCAL_00934	TCAL_10408	A0A553P7J4	A0A553PJF4	PlsC domain-containing protein.	SGNH_hydro domain-containing protein.	0.760
TCAL_00934	TCAL_13122	A0A553P7J4	A0A553PJQ0	PlsC domain-containing protein.	Uncharacterized protein.	0.443
TCAL_00934	TCAL_13123	A0A553P7J4	A0A553PJQ5	PlsC domain-containing protein.	Uncharacterized protein.	0.443
TCAL_00934	TCAL_13566	A0A553P7J4	A0A553PES7	PlsC domain-containing protein.	Phospholipase A2.	0.909
TCAL_00934	TCAL_15090	A0A553P7J4	A0A553NVU5	PlsC domain-containing protein.	Phospholipase A(2).	0.586
TCAL_00934	TCAL_16130	A0A553P7J4	A0A553P3F3	PlsC domain-containing protein.	Uncharacterized protein.	0.443
TCAL_06445	TCAL_10408	A0A553NPT1	A0A553PJF4	PlsC domain-containing protein.	SGNH_hydro domain-containing protein.	0.760
TCAL_06445	TCAL_13122	A0A553NPT1	A0A553PJQ0	PlsC domain-containing protein.	Uncharacterized protein.	0.443
TCAL_06445	TCAL_13123	A0A553NPT1	A0A553PJQ5	PlsC domain-containing protein.	Uncharacterized protein.	0.443
TCAL_06445	TCAL_13566	A0A553NPT1	A0A553PES7	PlsC domain-containing protein.	Phospholipase A2.	0.909
TCAL_06445	TCAL_15090	A0A553NPT1	A0A553NVU5	PlsC domain-containing protein.	Phospholipase A(2).	0.586
TCAL_06445	TCAL_16130	A0A553NPT1	A0A553P3F3	PlsC domain-containing protein.	Uncharacterized protein.	0.443
TCAL_07262	TCAL_10408	A0A553NEV2	A0A553PJF4	Uncharacterized protein.	SGNH_hydro domain-containing protein.	0.861
TCAL_07262	TCAL_10557	A0A553NEV2	A0A553N779	Uncharacterized protein.	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.	0.858