STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_08116HIT-type domain-containing protein. (155 aa)    
Predicted Functional Partners:
TCAL_07010
Uncharacterized protein; Belongs to the actin family.
   
 
 0.930
TCAL_01864
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.
    
 
 0.920
TCAL_06253
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.
    
 
 0.917
TCAL_03283
YL1_C domain-containing protein.
    
 
 0.902
TCAL_05546
Uncharacterized protein.
   
 
 0.877
TCAL_12721
SANT domain-containing protein.
    
 
 0.873
TCAL_01037
Histone H2A; Belongs to the histone H2A family.
    
 
 0.866
TCAL_04150
Uncharacterized protein; Belongs to the actin family.
    
 
 0.834
TCAL_07407
F-box domain-containing protein; Belongs to the actin family.
   
 
 0.826
TCAL_00739
BCNT-C domain-containing protein.
    
 
 0.709
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.