STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_08968Helicase ATP-binding domain-containing protein. (1332 aa)    
Predicted Functional Partners:
TCAL_03979
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
  
 0.991
TCAL_10900
DNA_mis_repair domain-containing protein.
   
 0.971
TCAL_16866
Uncharacterized protein.
   
 0.949
TCAL_00515
Uncharacterized protein.
   
 0.949
TCAL_03216
Uncharacterized protein.
   
 0.919
TCAL_00494
Uncharacterized protein.
   
 0.917
TCAL_08659
VWFA domain-containing protein.
    
 0.914
TCAL_10082
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.914
TCAL_03983
Uncharacterized protein.
    
 0.913
TCAL_11642
Uncharacterized protein.
    
 0.912
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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