STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_04238Uncharacterized protein. (233 aa)    
Predicted Functional Partners:
TCAL_09638
Uncharacterized protein.
    
 
 0.903
TCAL_01164
Plug_translocon domain-containing protein.
   
 
 0.885
TCAL_06591
CRC domain-containing protein.
   
 0.860
TCAL_02091
Uncharacterized protein.
   
 0.847
TCAL_00053
DIRP domain-containing protein.
    
 0.837
TCAL_14675
Uncharacterized protein.
    
 
 0.807
TCAL_14674
Uncharacterized protein.
    
 
 0.807
TCAL_07105
Ribosomal_L2_C domain-containing protein.
   
   0.788
TCAL_13628
WD_REPEATS_REGION domain-containing protein.
   
 0.787
TCAL_06917
Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.
   
   0.783
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.