TCAL_12690 protein (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TCAL_12690

Uncharacterized protein. (460 aa)

Predicted Functional Partners:

TCAL_11965

0.967

TCAL_10031

0.927

TCAL_09302

0.927

TCAL_05639

0.920

TCAL_02663

0.835

TCAL_03917

0.800

TCAL_00814

0.788

TCAL_02044

0.705

TCAL_13117

0.688

TCAL_17199

0.651

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00814	TCAL_02663	A0A553NBE7	A0A553PFU3	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.527
TCAL_00814	TCAL_03917	A0A553NBE7	A0A553NBY7	Uncharacterized protein.	GYF domain-containing protein.	0.559
TCAL_00814	TCAL_05639	A0A553NBE7	A0A553NV28	Uncharacterized protein.	Uncharacterized protein.	0.657
TCAL_00814	TCAL_09302	A0A553NBE7	A0A553NZX9	Uncharacterized protein.	MPN domain-containing protein.	0.584
TCAL_00814	TCAL_10031	A0A553NBE7	A0A553NXG7	Uncharacterized protein.	MPN domain-containing protein.	0.584
TCAL_00814	TCAL_11965	A0A553NBE7	A0A553NB23	Uncharacterized protein.	Uncharacterized protein.	0.613
TCAL_00814	TCAL_12690	A0A553NBE7	A0A553PM68	Uncharacterized protein.	Uncharacterized protein.	0.788
TCAL_00814	TCAL_13117	A0A553NBE7	A0A553PHH2	Uncharacterized protein.	Uncharacterized protein.	0.439
TCAL_02044	TCAL_02663	A0A553NAT2	A0A553PFU3	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.587
TCAL_02044	TCAL_03917	A0A553NAT2	A0A553NBY7	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	GYF domain-containing protein.	0.529
TCAL_02044	TCAL_05639	A0A553NAT2	A0A553NV28	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	Uncharacterized protein.	0.784
TCAL_02044	TCAL_09302	A0A553NAT2	A0A553NZX9	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	MPN domain-containing protein.	0.800
TCAL_02044	TCAL_10031	A0A553NAT2	A0A553NXG7	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	MPN domain-containing protein.	0.800
TCAL_02044	TCAL_12690	A0A553NAT2	A0A553PM68	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	Uncharacterized protein.	0.705
TCAL_02044	TCAL_13117	A0A553NAT2	A0A553PHH2	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	Uncharacterized protein.	0.784
TCAL_02663	TCAL_00814	A0A553PFU3	A0A553NBE7	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.527
TCAL_02663	TCAL_02044	A0A553PFU3	A0A553NAT2	Uncharacterized protein; Belongs to the DEAD box helicase family.	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	0.587
TCAL_02663	TCAL_03917	A0A553PFU3	A0A553NBY7	Uncharacterized protein; Belongs to the DEAD box helicase family.	GYF domain-containing protein.	0.933
TCAL_02663	TCAL_05639	A0A553PFU3	A0A553NV28	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.990
TCAL_02663	TCAL_09302	A0A553PFU3	A0A553NZX9	Uncharacterized protein; Belongs to the DEAD box helicase family.	MPN domain-containing protein.	0.969