STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_10037Uncharacterized protein. (1017 aa)    
Predicted Functional Partners:
TCAL_09825
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.919
TCAL_00758
Uncharacterized protein.
 
  
 0.710
TCAL_12934
Uncharacterized protein.
    
 0.689
TCAL_16876
Uncharacterized protein.
    
 0.688
TCAL_06066
Uncharacterized protein.
    
 0.641
TCAL_13871
Uncharacterized protein.
     
 0.619
TCAL_00993
WD_REPEATS_REGION domain-containing protein.
    
 0.617
TCAL_10600
Tap-RNA_bind domain-containing protein.
    
 0.615
TCAL_06338
RRM Nup35-type domain-containing protein.
    
 0.614
TCAL_05544
Uncharacterized protein; Belongs to the WD repeat SEC13 family.
    
 0.605
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.