STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_05131Uncharacterized protein. (1427 aa)    
Predicted Functional Partners:
TCAL_00777
Uncharacterized protein.
    
 0.595
TCAL_05519
Uncharacterized protein.
    
 0.595
TCAL_06546
Uncharacterized protein.
    
 0.595
TCAL_11451
Uncharacterized protein.
    
 0.595
TCAL_00024
Uncharacterized protein.
    
 0.595
TCAL_10807
Uncharacterized protein; Belongs to the AAA ATPase family.
   
 0.565
TCAL_01665
USP domain-containing protein; Belongs to the peptidase C19 family.
    
  0.539
TCAL_04849
PDZ domain-containing protein.
   
 0.520
TCAL_11689
PDZ domain-containing protein.
    
 0.503
TCAL_04145
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
    
  0.484
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.