STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_05986Uncharacterized protein. (1161 aa)    
Predicted Functional Partners:
TCAL_03922
Uncharacterized protein.
   
 0.903
TCAL_07340
WD_REPEATS_REGION domain-containing protein.
   
 0.851
TCAL_04758
Slu7 domain-containing protein.
    
 0.848
TCAL_07046
Sas10 domain-containing protein.
   
 0.835
TCAL_03848
Uncharacterized protein.
   
 0.831
TCAL_02792
SFM domain-containing protein.
    
 0.824
TCAL_11453
Uncharacterized protein.
  
0.823
TCAL_01777
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.814
TCAL_02060
S4 RNA-binding domain-containing protein.
   
  0.812
TCAL_04750
Nucleolar protein 6.
   
  0.812
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.