STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_16037PALP domain-containing protein. (314 aa)    
Predicted Functional Partners:
TCAL_07996
Uncharacterized protein.
  
 
 0.823
TCAL_06570
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.781
TCAL_09974
Diphthami_syn_2 domain-containing protein.
  
 0.779
TCAL_10813
Uncharacterized protein.
  
 
  0.738
TCAL_11475
Uncharacterized protein; Belongs to the TPP enzyme family.
  
 0.737
TCAL_13188
Uncharacterized protein; Belongs to the TPP enzyme family.
  
 0.717
TCAL_13271
PALP domain-containing protein.
  
  
0.709
TCAL_11459
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
 0.706
TCAL_03124
Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
0.669
TCAL_12115
Fe-ADH domain-containing protein.
  
 
 0.666
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.