STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_06770c-SKI_SMAD_bind domain-containing protein. (752 aa)    
Predicted Functional Partners:
TCAL_08168
Mothers against decapentaplegic homolog.
    
 0.898
TCAL_10202
Mothers against decapentaplegic homolog.
    
 0.898
TCAL_16560
MH1 domain-containing protein.
   
 0.738
TCAL_10252
Mothers against decapentaplegic homolog.
   
 0.738
TCAL_03363
Mothers against decapentaplegic homolog.
   
 0.738
TCAL_01659
Uncharacterized protein.
   
 0.738
TCAL_06123
Uncharacterized protein.
   
 0.735
TCAL_11649
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
   
 0.603
TCAL_06351
Ribosomal_S27 domain-containing protein.
    
  0.595
TCAL_06869
Uncharacterized protein.
    
 0.546
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.