STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_06006MSP domain-containing protein. (266 aa)    
Predicted Functional Partners:
TCAL_00506
Uncharacterized protein.
   
 0.722
TCAL_16265
START domain-containing protein.
    
 0.717
TCAL_11477
START domain-containing protein.
    
 0.717
TCAL_12158
START domain-containing protein.
    
 0.717
TCAL_00352
BZIP domain-containing protein.
     
 0.672
TCAL_04301
Oxysterol-binding protein; Belongs to the OSBP family.
    
 0.652
TCAL_15014
Uncharacterized protein.
    
 0.652
TCAL_02402
Uncharacterized protein.
    
 0.652
TCAL_11861
PH domain-containing protein.
    
 0.652
TCAL_11340
t-SNARE coiled-coil homology domain-containing protein.
    
 0.624
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.