STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_14804Aminotran_5 domain-containing protein. (153 aa)    
Predicted Functional Partners:
TCAL_17061
Aminotran_5 domain-containing protein.
 
     0.951
TCAL_09918
Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.878
TCAL_00529
FMN hydroxy acid dehydrogenase domain-containing protein.
  
 0.832
TCAL_04618
TPR_REGION domain-containing protein.
    
 0.810
TCAL_12115
Fe-ADH domain-containing protein.
    
 0.802
TCAL_04795
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.
  
 
 0.792
TCAL_11459
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
 
 0.786
TCAL_09253
SHMT domain-containing protein.
  
 0.779
TCAL_04503
SHMT domain-containing protein.
  
 0.779
TCAL_14985
Aminotran_1_2 domain-containing protein.
  
 0.771
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.