STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_13388Uncharacterized protein. (724 aa)    
Predicted Functional Partners:
TCAL_06067
TOG domain-containing protein.
    
 
 0.915
TCAL_11255
Uncharacterized protein.
   
 0.895
TCAL_01145
Matrin-type domain-containing protein.
   
 
 0.838
TCAL_05023
LRRcap domain-containing protein.
    
 
 0.809
TCAL_04412
CPSF_A domain-containing protein.
    
 
 0.794
TCAL_08221
Uncharacterized protein.
   
   0.770
TCAL_15070
Uncharacterized protein.
   
   0.770
TCAL_13791
Sm domain-containing protein; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
   0.752
TCAL_10781
CS domain-containing protein.
   
 0.750
TCAL_04940
SAP domain-containing protein.
   
 
 0.742
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.