STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_12037WAPL domain-containing protein. (1094 aa)    
Predicted Functional Partners:
TCAL_13397
Uncharacterized protein.
   
 0.992
TCAL_08852
Uncharacterized protein.
    
 0.941
TCAL_10010
Nipped-B protein.
   
 0.918
TCAL_03745
Structural maintenance of chromosomes protein.
    
 0.885
TCAL_05258
Uncharacterized protein.
     
 0.865
TCAL_01861
Structural maintenance of chromosomes protein.
    
 0.844
TCAL_09749
SMC_N domain-containing protein.
    
 0.844
TCAL_09748
Uncharacterized protein.
    
 0.844
TCAL_04651
Peptidase C50 domain-containing protein.
     
 0.836
TCAL_16794
Acetyltransf_13 domain-containing protein.
   
 
 0.821
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.