STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL45824.1Hypothetical protein. (246 aa)    
Predicted Functional Partners:
SCL49385.1
Hypothetical protein.
  
     0.768
SCL63283.1
Hypothetical protein.
  
     0.767
SCL56357.1
Formate dehydrogenase beta subunit.
   
    0.761
SCL64850.1
Septum formation.
  
     0.756
SCL53261.1
Hypothetical protein.
  
     0.752
SCL58577.1
Fibronectin type III domain-containing protein.
  
     0.751
SCL52475.1
Tetratricopeptide repeat-containing protein.
  
     0.747
SCL46457.1
Hypothetical protein.
  
     0.737
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
 0.737
SCL64391.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
     0.718
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.