STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL45979.1Hypothetical protein. (157 aa)    
Predicted Functional Partners:
SCL45973.1
Membrane carboxypeptidase (penicillin-binding protein).
     
 0.860
SCL45976.1
Hypothetical protein.
       0.773
SCL51781.1
Phage shock protein A (PspA) family protein.
  
     0.691
SCL52023.1
Protein of unknown function.
  
     0.620
SCL45981.1
DNA-binding transcriptional regulator, PadR family.
       0.597
SCL59773.1
Protein of unknown function; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
     0.596
SCL61532.1
TLP18.3, Psb32 and MOLO-1 founding protein of phosphatase.
  
     0.576
SCL45984.1
Myo-inositol-1-phosphate synthase.
       0.562
SCL56975.1
Hypothetical protein.
  
     0.561
SCL47621.1
DNA-binding transcriptional regulator, MarR family.
     
 0.511
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.