STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL46104.1Transcriptional regulator, ArsR family. (122 aa)    
Predicted Functional Partners:
SCL46098.1
Arsenate reductase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
  
 0.888
SCL46101.1
Glycerol uptake facilitator (Major Intrinsic Protein Family); Belongs to the MIP/aquaporin (TC 1.A.8) family.
       0.778
SCL46106.1
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein.
 
     0.613
SCL48615.1
Arsenate reductase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
  
 0.505
SCL48605.1
Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
  
 0.463
SCL46110.1
CubicO group peptidase, beta-lactamase class C family.
       0.415
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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