STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL46126.1DNA-binding transcriptional activator of the SARP family. (248 aa)    
Predicted Functional Partners:
SCL46134.1
Putative baseplate assembly protein.
  
     0.569
SCL46144.1
Uncharacterized conserved protein, implicated in type VI secretion and phage assembly.
  
     0.568
SCL47472.1
HSP20 family protein; Belongs to the small heat shock protein (HSP20) family.
  
 
 
 0.568
SCL46168.1
Hypothetical protein.
  
     0.567
SCL46132.1
Phage tail protein domain-containing protein.
  
     0.563
SCL46191.1
Hypothetical protein.
 
     0.562
SCL56221.1
HSP20 family protein; Belongs to the small heat shock protein (HSP20) family.
  
 
 
 0.561
SCL59223.1
Nicotinamide-nucleotide adenylyltransferase, NadR type.
  
    0.547
SCL46148.1
Hypothetical protein.
 
     0.537
SCL46149.1
Conserved hypothetical phage tail region protein.
  
     0.535
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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