STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL46148.1Hypothetical protein. (243 aa)    
Predicted Functional Partners:
SCL46134.1
Putative baseplate assembly protein.
 
 
 0.998
SCL46138.1
Hypothetical protein.
 
   0.998
SCL46149.1
Conserved hypothetical phage tail region protein.
 
   0.997
SCL46168.1
Hypothetical protein.
 
 
 0.994
SCL46144.1
Uncharacterized conserved protein, implicated in type VI secretion and phage assembly.
 
    0.964
SCL46132.1
Phage tail protein domain-containing protein.
 
  
 0.953
SCL46141.1
Zn-binding Pro-Ala-Ala-Arg (PAAR) domain-containing protein, incolved in TypeVI secretion.
 
     0.945
SCL46164.1
Hypothetical protein.
 
    0.818
SCL46180.1
ATPase family associated with various cellular activities (AAA).
 
   
 0.809
SCL46166.1
Conserved hypothetical phage tail region protein.
 
     0.804
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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