STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL46184.1Protein of unknown function. (265 aa)    
Predicted Functional Partners:
SCL46149.1
Conserved hypothetical phage tail region protein.
 
 
   0.979
SCL46180.1
ATPase family associated with various cellular activities (AAA).
 
     0.955
SCL46186.1
Conserved repeat domain-containing protein.
 
     0.891
SCL46191.1
Hypothetical protein.
 
     0.856
SCL46164.1
Hypothetical protein.
 
     0.808
SCL46168.1
Hypothetical protein.
 
     0.805
SCL46166.1
Conserved hypothetical phage tail region protein.
 
     0.802
SCL46148.1
Hypothetical protein.
 
     0.801
SCL46144.1
Uncharacterized conserved protein, implicated in type VI secretion and phage assembly.
 
     0.799
SCL46132.1
Phage tail protein domain-containing protein.
 
     0.795
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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