STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL46274.1Predicted ATPase. (867 aa)    
Predicted Functional Partners:
SCL57521.1
DNA-binding transcriptional activator of the SARP family.
 
  
 0.774
SCL59223.1
Nicotinamide-nucleotide adenylyltransferase, NadR type.
   
 
  0.714
SCL49902.1
Hypothetical protein.
  
     0.706
SCL60013.1
Hypothetical protein.
  
     0.688
SCL50029.1
Sporulation and spore germination.
  
     0.664
SCL61429.1
Glyoxalase-like domain-containing protein.
  
     0.614
SCL51791.1
Hypothetical protein.
  
     0.611
SCL46443.1
Hypothetical protein.
  
     0.593
SCL57162.1
Arylsulfatase A.
  
     0.593
SCL62202.1
Winged helix-turn helix; Manually curated.
  
     0.583
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.