STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL46341.1Cell elongation-specific peptidoglycan biosynthesis regulator RodA; Belongs to the SEDS family. (496 aa)    
Predicted Functional Partners:
SCL46343.1
Cell elongation-specific peptidoglycan D,D-transpeptidase.
 
 0.999
SCL59572.1
Peptidoglycan synthetase FtsI.
 
 0.986
SCL46349.1
Serine/threonine protein kinase.
 
 
 0.946
ftsQ
Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
 
 0.946
SCL53628.1
Hypothetical protein.
   
 
 0.919
SCL61951.1
Cell division protein FtsI/penicillin-binding protein 2.
 
 0.919
SCL46331.1
FHA domain-containing protein.
 
   
 0.911
SCL46347.1
Serine/threonine protein kinase.
  
 
 0.907
SCL46335.1
FHA domain-containing protein.
 
   
 0.891
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
 
 
 0.877
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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