STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL46361.1Uncharacterized conserved protein YlxW, UPF0749 family. (268 aa)    
Predicted Functional Partners:
SCL56310.1
Small basic protein.
 
    0.879
SCL46358.1
LPXTG-site transpeptidase (sortase) family protein.
       0.841
SCL46353.1
Anthranilate synthase, component II.
       0.817
SCL46356.1
Hypothetical protein.
       0.817
SCL56307.1
Uncharacterized conserved protein YlxW, UPF0749 family.
  
     0.774
crgA
Uncharacterised protein family (UPF0233); Involved in cell division; Belongs to the CrgA family.
       0.571
SCL47656.1
Transcription regulator of the Arc/MetJ class.
  
     0.555
disA
Diadenylate cyclase; Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c-di-AMP likely acts as a signaling molecule that may couple DNA integrity with a cellular process.
  
     0.498
SCL47569.1
TIGR03089 family protein.
  
     0.419
SCL49300.1
2'-5' RNA ligase.
  
     0.408
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.