STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL46429.1Sensor histidine kinase inhibitor, KipI family. (261 aa)    
Predicted Functional Partners:
SCL46433.1
Biotin-dependent carboxylase uncharacterized domain-containing protein.
 0.999
SCL46436.1
UPF0271 protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
 
 
 0.998
SCL59368.1
Glutamate synthase (NADH) large subunit.
   
 
  0.893
SCL61947.1
Glutamate dehydrogenase.
    
  0.678
SCL61955.1
Arginase; Belongs to the arginase family.
   
 
  0.655
SCL47260.1
Transcriptional regulator, IclR family.
  
    0.576
SCL48367.1
PrgI family protein.
  
    0.576
SCL48735.1
PrgI family protein.
  
    0.576
SCL51243.1
Transcriptional regulator, IclR family.
  
    0.576
SCL54313.1
Transcriptional regulator, IclR family.
  
    0.576
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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