STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL46698.1Uncharacterized protein. (396 aa)    
Predicted Functional Partners:
SCL57162.1
Arylsulfatase A.
 
 
 0.900
SCL60349.1
Hypothetical protein.
  
 
 0.871
SCL63703.1
Hypothetical protein.
  
 
 0.871
SCL54149.1
Hypothetical protein.
 
 
 0.855
purM
Phosphoribosylformylglycinamidine cyclo-ligase.
       0.538
SCL64850.1
Septum formation.
  
     0.497
SCL53261.1
Hypothetical protein.
  
     0.463
SCL49976.1
Conserved DNA-binding protein YbaB; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
  
     0.458
SCL65855.1
Ferric iron reductase FhuF-like transporter.
  
     0.452
SCL45362.1
Hypothetical protein.
  
     0.432
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
Server load: low (26%) [HD]