STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL46767.1Phytoene synthase. (320 aa)    
Predicted Functional Partners:
SCL46760.1
Phytoene desaturase.
 
 0.998
SCL46763.1
Geranylgeranyl diphosphate synthase, type I; Belongs to the FPP/GGPP synthase family.
  
 0.974
SCL48552.1
DNA phosphorothioation-associated putative methyltransferase.
    
 0.974
SCL59671.1
Phytoene desaturase.
 
 0.973
SCL47255.1
Heptaprenyl diphosphate synthase; Manually curated; Belongs to the FPP/GGPP synthase family.
  
 0.963
idi
Isopentenyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
  
 
 0.955
SCL59683.1
Geranylgeranyl diphosphate synthase, type I; Manually curated; Belongs to the FPP/GGPP synthase family.
  
 0.952
SCL60996.1
Protoporphyrinogen oxidase.
 
 
 0.933
SCL61016.1
Geranylgeranyl diphosphate synthase, type I; Belongs to the FPP/GGPP synthase family.
  
 0.928
SCL46770.1
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
 
   
 0.900
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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