STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL46822.1Hypothetical protein. (311 aa)    
Predicted Functional Partners:
SCL46806.1
Type II secretion system (T2SS), protein F.
 
     0.951
SCL46811.1
Flp pilus assembly protein TadB.
 
     0.951
SCL46816.1
Cellulose biosynthesis protein BcsQ.
 
     0.951
SCL46819.1
Hypothetical protein.
 
     0.951
SCL46797.1
Hypothetical protein.
 
     0.934
SCL46791.1
LysM domain-containing protein.
 
     0.929
SCL46800.1
TadE-like protein.
 
     0.929
SCL46794.1
Putative Flp pilus-assembly TadE/G-like.
 
     0.926
SCL46813.1
Pilus assembly protein, ATPase of CpaF family.
 
     0.891
SCL46824.1
Hypothetical protein.
       0.796
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.