STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL46931.1Putative ABC transport system ATP-binding protein. (233 aa)    
Predicted Functional Partners:
SCL64281.1
Putative ABC transport system permease protein.
 0.893
SCL46935.1
FtsX-like permease family protein.
 
 
  0.881
SCL65517.1
Putative ABC transport system permease protein.
 0.844
SCL46930.1
Transcriptional regulator, PadR family.
 
     0.838
SCL65480.1
Putative ABC transport system permease protein.
  0.831
SCL52573.1
Putative ABC transport system permease protein.
 
  0.809
SCL51644.1
Putative ABC transport system permease protein.
  
  0.718
SCL52192.1
FtsX-like permease family protein.
  
  0.711
SCL52195.1
Putative ABC transport system permease protein.
  
  0.711
SCL52464.1
Outer membrane lipoprotein-sorting protein.
   
 
 0.683
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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