STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL47045.1Transcriptional regulator, AsnC family. (153 aa)    
Predicted Functional Partners:
SCL56534.1
Transcriptional regulator, AsnC family.
  
     0.759
SCL47049.1
Cysteine synthase A.
       0.748
SCL61591.1
uroporphyrinogen-III C-methyltransferase.
  
 
 0.654
SCL48984.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.649
SCL47042.1
DNA binding domain-containing protein, excisionase family.
       0.559
SCL58628.1
Phenazine biosynthesis protein phzE.
   
 
  0.488
SCL65783.1
Phenazine biosynthesis protein phzE.
   
 
  0.488
SCL60800.1
Transcriptional regulator, AsnC family.
  
     0.442
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.