STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL47101.1ABC-2 type transport system ATP-binding protein. (294 aa)    
Predicted Functional Partners:
SCL47097.1
ABC-2 type transport system permease protein.
 
  
  0.952
SCL47109.1
Hypothetical protein.
 
     0.920
SCL47105.1
Winged helix DNA-binding domain-containing protein.
 
     0.877
SCL47111.1
DNA helicase IV.
       0.595
SCL50932.1
ABC-2 family transporter protein.
   
  0.567
SCL62902.1
ABC-2 type transport system permease protein.
   
  0.567
SCL64327.1
ABC-2 type transport system permease protein.
   
  0.567
SCL64391.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
   
  0.567
SCL50264.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
  0.533
atpD
ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
   0.531
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.