STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL47135.1ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD. (188 aa)    
Predicted Functional Partners:
SCL47129.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB.
 
 
 0.997
SCL47139.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
 
 
 0.997
SCL47131.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.
 
 
 0.996
SCL47125.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA.
 
 
 0.994
SCL56639.1
acyl-CoA thioesterase.
 
 
 0.972
SCL49008.1
Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
  0.913
SCL55832.1
phenylacetate-CoA ligase.
 
  
 0.911
SCL57800.1
Ferredoxin-NADP reductase.
  
 
 0.823
SCL59028.1
Nitrogen fixation protein NifU.
  
    0.715
SCL49012.1
Transcriptional regulator, PaaX family.
 
   
 0.600
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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