STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL47350.1Pilus assembly protein CpaF. (399 aa)    
Predicted Functional Partners:
SCL47357.1
Flp pilus assembly protein TadB.
 
  
 0.936
SCL47354.1
Tight adherence protein B.
  
  
 0.902
SCL47349.1
Helicase/secretion neighborhood CpaE-like protein.
 
     0.868
SCL47359.1
Protein of unknown function.
     
 0.802
SCL47366.1
Helicase/secretion neighborhood TadE-like protein.
     
 0.738
SCL47364.1
TadE-like protein.
       0.720
SCL46816.1
Cellulose biosynthesis protein BcsQ.
  
  
 0.511
SCL46806.1
Type II secretion system (T2SS), protein F.
  
  
 0.495
SCL46811.1
Flp pilus assembly protein TadB.
  
  
 0.495
SCL48480.1
Type II secretion system (T2SS), protein F.
  
  
 0.495
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.