STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL47366.1Helicase/secretion neighborhood TadE-like protein. (118 aa)    
Predicted Functional Partners:
SCL47359.1
Protein of unknown function.
     
 0.845
SCL47364.1
TadE-like protein.
       0.817
SCL47349.1
Helicase/secretion neighborhood CpaE-like protein.
       0.748
SCL47350.1
Pilus assembly protein CpaF.
     
 0.738
SCL47354.1
Tight adherence protein B.
       0.729
SCL47357.1
Flp pilus assembly protein TadB.
       0.729
SCL64028.1
Protein of unknown function.
  
     0.452
SCL63780.1
Hypothetical protein.
  
     0.430
SCL47344.1
Von Hippel-Lindau disease tumour suppressor protein.
       0.400
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.