STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL47405.1D-serine deaminase, pyridoxal phosphate-dependent. (402 aa)    
Predicted Functional Partners:
SCL47398.1
L-gulonolactone oxidase.
 
    0.798
SCL60872.1
FAD-linked oxidoreductase.
 
    0.783
SCL51181.1
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
  0.677
SCL47411.1
DNA polymerase-3 subunit delta'.
       0.655
SCL46236.1
Lysophospholipase L1.
  
     0.646
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.627
SCL59140.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
  
  
  0.513
SCL46937.1
Threonine dehydratase.
    
  0.471
SCL49872.1
Threonine dehydratase.
    
  0.471
SCL60632.1
Xylitol oxidase.
 
    0.445
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.