STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL47431.1Two component transcriptional regulator, LuxR family. (214 aa)    
Predicted Functional Partners:
SCL47435.1
Signal transduction histidine kinase.
 
 0.983
SCL46951.1
Signal transduction histidine kinase.
  
 0.885
SCL47960.1
Signal transduction histidine kinase.
  
  0.849
SCL56899.1
Signal transduction histidine kinase.
  
  0.843
SCL53613.1
Signal transduction histidine kinase.
  
  0.835
SCL58024.1
Signal transduction histidine kinase.
  
  0.830
SCL46199.1
Signal transduction histidine kinase.
  
  0.828
SCL65737.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.823
SCL64011.1
Signal transduction histidine kinase.
  
  0.821
SCL46112.1
Histidine kinase.
  
  0.803
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.