STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL47590.1Phosphoglycolate phosphatase. (207 aa)    
Predicted Functional Partners:
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
 
  0.814
SCL47595.1
Cold-shock DNA-binding protein family.
       0.721
SCL51181.1
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.709
SCL64230.1
Glycolate oxidase.
    
  0.692
SCL50542.1
Dephospho-CoA kinase.
  
 
  0.691
SCL46367.1
Fe-S oxidoreductase.
    
  0.686
SCL58214.1
L-lactate dehydrogenase complex protein LldE.
    
  0.686
SCL46943.1
Glycolate oxidase FAD binding subunit.
    
  0.664
SCL50478.1
Cobalt/nickel transport system permease protein.
  
    0.649
SCL50481.1
Cobalt/nickel transport protein.
  
    0.649
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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