STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL47653.1Nitroreductase. (197 aa)    
Predicted Functional Partners:
SCL61591.1
uroporphyrinogen-III C-methyltransferase.
    
 0.735
SCL54380.1
FMN reductase.
  
  
 0.705
SCL47649.1
Aldose 1-epimerase.
  
    0.701
SCL63877.1
uroporphyrinogen-III C-methyltransferase.
  
 
 0.690
SCL51699.1
Riboflavin kinase / FMN adenylyltransferase; Belongs to the ribF family.
    
 0.666
SCL54062.1
FMN reductase.
     
 0.630
SCL56060.1
Thioesterase domain-containing protein.
  
 
 0.630
SCL63651.1
Adenylyltransferase and sulfurtransferase.
    
  0.630
SCL47656.1
Transcription regulator of the Arc/MetJ class.
       0.619
cobT
Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).
  
 
 0.618
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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