STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL47692.1Dienelactone hydrolase. (217 aa)    
Predicted Functional Partners:
SCL45933.1
Predicted phosphoribosyltransferase.
     0.979
SCL62236.1
Erythromycin esterase homolog.
     0.907
SCL56060.1
Thioesterase domain-containing protein.
  
 
 0.680
SCL65529.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.662
SCL60630.1
Zn-dependent protease (includes SpoIVFB); Belongs to the peptidase M50B family.
 
    0.512
SCL54209.1
Alcohol dehydrogenase, class IV.
  
 
 0.502
SCL52390.1
Nitroreductase.
 
  
 0.495
SCL48441.1
Hypothetical protein.
   
    0.482
SCL49579.1
Trehalose 6-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.482
SCL61588.1
Trehalose 6-phosphatase.
   
    0.482
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.