STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL47817.1Helix-turn-helix. (412 aa)    
Predicted Functional Partners:
SCL47820.1
Helix-turn-helix domain-containing protein.
 
     0.812
SCL60948.1
Helix-turn-helix domain-containing protein.
  
     0.766
SCL51480.1
Hypothetical protein.
  
     0.745
SCL63324.1
Hypothetical protein.
  
     0.706
SCL55461.1
Hypothetical protein.
  
     0.701
SCL55730.1
NitT/TauT family transport system substrate-binding protein.
  
     0.701
SCL52520.1
Transcriptional regulator, contains XRE-family HTH domain.
  
     0.700
SCL54002.1
Hypothetical protein.
  
     0.671
SCL50456.1
Methyltransferase domain-containing protein.
  
     0.665
SCL55724.1
NitT/TauT family transport system substrate-binding protein.
  
     0.665
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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