STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL47823.1Helix-turn-helix domain-containing protein. (372 aa)    
Predicted Functional Partners:
SCL52520.1
Transcriptional regulator, contains XRE-family HTH domain.
  
     0.654
SCL47820.1
Helix-turn-helix domain-containing protein.
 
    
0.628
SCL57914.1
Helix-turn-helix domain-containing protein.
  
     0.622
SCL47827.1
Hypothetical protein.
       0.576
SCL50717.1
Protein of unknown function.
  
     0.571
SCL49420.1
Protein of unknown function.
  
     0.499
SCL59223.1
Nicotinamide-nucleotide adenylyltransferase, NadR type.
   
 
  0.483
SCL57924.1
NTP pyrophosphatase, house-cleaning of non-canonical NTPs.
  
    0.465
SCL47817.1
Helix-turn-helix.
 
     0.463
SCL48690.1
Flavoprotein.
  
    0.451
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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