STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL47897.1Sporulation-control protein. (374 aa)    
Predicted Functional Partners:
SCL47901.1
Hypothetical protein.
 
     0.559
SCL52602.1
Protein of unknown function.
  
     0.495
SCL49420.1
Protein of unknown function.
  
     0.494
SCL47894.1
Hypothetical protein.
       0.447
SCL49223.1
Protein of unknown function.
  
     0.429
SCL47913.1
Hypothetical protein.
 
     0.425
SCL55582.1
VWA domain containing CoxE-like protein.
  
     0.415
SCL51390.1
PhoD-like phosphatase.
  
     0.405
SCL59680.1
Hypothetical protein.
  
     0.404
SCL47909.1
Putative transposase.
 
     0.403
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.