STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL47920.1Transcriptional regulator, LacI family. (352 aa)    
Predicted Functional Partners:
SCL65529.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
    
   0.924
SCL59368.1
Glutamate synthase (NADH) large subunit.
    
 
 0.893
SCL58723.1
Transcriptional regulator, LacI family.
  
     0.774
SCL60928.1
Transcriptional regulator, LacI family.
  
     0.773
SCL55104.1
Transcriptional regulator, LacI family; Manually curated.
  
     0.750
SCL56057.1
Phosphopantetheine attachment site.
    
   0.718
SCL56060.1
Thioesterase domain-containing protein.
    
   0.718
SCL47922.1
Beta-glucosidase.
 
  
  0.613
SCL47916.1
cephalosporin-C deacetylase.
       0.592
SCL62916.1
Sulfate adenylyltransferase.
    
   0.550
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.