STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL47933.1Carbohydrate ABC transporter substrate-binding protein, CUT1 family. (544 aa)    
Predicted Functional Partners:
SCL47927.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
 
  0.997
SCL47929.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
  0.985
SCL57282.1
Alpha-glucoside transport system permease protein.
  
 0.946
SCL47938.1
Protein of unknown function, DUF624.
 
    0.925
SCL56201.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
  
  0.923
SCL56195.1
Putative aldouronate transport system substrate-binding protein.
  
  
  0.908
SCL47941.1
Alpha-glucuronidase; Belongs to the glycosyl hydrolase 67 family.
 
     0.886
SCL56198.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
 
  0.883
SCL56688.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
  
  0.752
SCL51084.1
Cellobiose transport system permease protein.
   
  0.718
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.