STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL47966.1Protein kinase domain-containing protein. (1017 aa)    
Predicted Functional Partners:
SCL57340.1
ATP-binding cassette, subfamily C.
 
     0.764
SCL57336.1
ATP-binding cassette, subfamily B.
 
     0.720
SCL46951.1
Signal transduction histidine kinase.
  
 0.624
SCL65372.1
Transcriptional regulator, TetR family.
  
     0.562
SCL53774.1
Hypothetical protein.
    
   0.528
SCL56393.1
Capsular exopolysaccharide family.
    
   0.528
SCL48249.1
GTP cyclohydrolase II.
  
 
  0.495
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
  0.495
SCL51157.1
ABC-type branched-chain amino acid transport system, substrate-binding protein.
  
     0.491
SCL51934.1
Hypothetical protein.
  
     0.475
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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