STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL47986.1Protein of unknown function. (65 aa)    
Predicted Functional Partners:
SCL47991.1
Helix-turn-helix domain-containing protein.
 
     0.907
SCL51558.1
Protein of unknown function.
  
     0.726
SCL61356.1
Protein of unknown function.
  
     0.706
SCL49424.1
Helix-turn-helix domain-containing protein.
  
     0.627
SCL50762.1
Helix-turn-helix domain-containing protein.
  
     0.627
SCL52600.1
Helix-turn-helix domain-containing protein.
  
     0.616
SCL51134.1
Helix-turn-helix domain-containing protein.
  
     0.615
SCL60547.1
Helix-turn-helix domain-containing protein.
  
     0.608
SCL59149.1
Helix-turn-helix domain-containing protein.
 
     0.603
SCL50626.1
Hypothetical protein.
  
     0.601
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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