STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL48008.1Esterase, PHB depolymerase family. (446 aa)    
Predicted Functional Partners:
SCL57414.1
Ricin-type beta-trefoil lectin domain-like.
 
 
   0.837
SCL57720.1
Endo-1,4-beta-xylanase (glycosyl hydrolase family 10).
 
 
 0.805
SCL58209.1
Pectate lyase.
 
   0.801
SCL65405.1
Endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
  
  0.746
SCL52447.1
Poly(3-hydroxybutyrate) depolymerase.
  
     0.729
SCL52344.1
Beta-xylosidase.
  
    0.709
SCL47036.1
Terpene synthase family, metal binding domain.
  
     0.626
SCL55141.1
Lysophospholipase L1.
 
  0.626
SCL53921.1
Cellulose binding domain-containing protein.
 
 
  
0.585
SCL57982.1
Endo-1,4-beta-xylanase (glycosyl hydrolase family 10).
 
 
 
0.572
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.