STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL48041.1Transcriptional regulator, GntR family. (231 aa)    
Predicted Functional Partners:
SCL54201.1
Transcriptional regulator, GntR family.
  
  
 0.790
SCL61118.1
Transcriptional regulator, GntR family.
  
  
 0.761
SCL47139.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
    
  0.644
SCL57800.1
Ferredoxin-NADP reductase.
    
  0.644
SCL48047.1
2-deoxy-D-gluconate 3-dehydrogenase.
  
 
  0.538
accA
acetyl-CoA carboxylase carboxyl transferase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
  
  
 0.537
SCL48044.1
2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
       0.527
SCL59223.1
Nicotinamide-nucleotide adenylyltransferase, NadR type.
   
    0.521
SCL58224.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
 
  0.443
SCL55025.1
DNA-binding transcriptional regulator, GntR family.
  
  
0.415
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.