STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL48044.12-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase. (341 aa)    
Predicted Functional Partners:
SCL48047.1
2-deoxy-D-gluconate 3-dehydrogenase.
 
 
  0.885
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
     
 0.861
SCL58923.1
Fructokinase.
  
 
  0.730
SCL48984.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.707
SCL52316.1
8-amino-7-oxononanoate synthase.
  
 
 0.666
SCL52915.1
Alcohol dehydrogenase, propanol-preferring.
 
 
0.655
ispD
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).
 
 
 0.623
SCL47139.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 
 0.621
SCL57800.1
Ferredoxin-NADP reductase.
  
 
 0.621
SCL62270.1
3-oxoacyl-[acyl-carrier protein] reductase.
   
 
  0.602
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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